MrBayes is a simple, easy to use application specially designed for the Bayesian estimation of phylogeny.
The program takes as input a character matrix in a NEXUS file format. The output is several files with the parameters that were sampled by the MCMC algorithm. MrBayes can summarize the...
|License: Freeware||Download (55): MrBayes Download|
MrAIC.pl is a Perl script for calculating AIC, AICc, BIC, and Akaike weights (for a review, see Burnham and Anderson, 2002) for nucleotide substitution models. Likelihood scores under different models are estimated using PHYML (Guindon and Gascuel, 2003). Input is DNA data in PHYML format (see...
|License: Freeware||Size: 10.24 KB||Download (19): MrAIC Download|
Script for manipulating tree (*.t, *.trprobs, *.con) and parameter (*.p) files from MrBayes (v.3). The script exctracts trees and (by default) the taxon translation table and the trailing ``end;'' from a MrBayes tree file. A number of options are available: Any contiguous interval of trees can...
|License: Freeware||Size: 20.48 KB||Download (17): Burntrees Download|
Geneious Basic is your personalized library of genomic and genetic data; that provides a fully integrated, visually advanced toolset for:Sequence alignment and phylogeneticsSequence analysisBLAST, Protein structure viewing, NCBI, EMBL, Pubmed auto-find & moreAPI for creating your own plugins...
|License: Freeware||Download (75): Geneious Download|